Package: marked
Version: 1.2.8
Date: 2023-10-13
Title: Mark-Recapture Analysis for Survival and Abundance Estimation
Author: Jeff Laake <jefflaake@gmail.com>, Devin Johnson
        <devin.johnson@noaa.gov>, Paul Conn <paul.conn@noaa.gov>,
        example for simHMM from Jay Rotella
Maintainer: Jeff Laake <jefflaake@gmail.com>
Description: Functions for fitting various models to capture-recapture
        data including mixed-effects Cormack-Jolly-Seber(CJS) and
        multistate models and the multi-variate state model structure
        for survival estimation and POPAN structured Jolly-Seber models
        for abundance estimation. There are also Hidden Markov model
        (HMM) implementations of CJS and multistate models with and
        without state uncertainty and a simulation capability for HMM
        models.
Depends: R (>= 3.5.0), lme4, methods, parallel
Imports: graphics, stats, utils, R2admb, truncnorm, coda, Matrix,
        numDeriv, expm, Rcpp (>= 0.9.13), TMB, optimx (>= 2013.8.6),
        data.table, knitr, kableExtra, bookdown
Suggests: ggplot2
LinkingTo: Rcpp
SystemRequirements: ADMB version 11 <http://admb-project.org/> for
        use.admb=TRUE; see readme.txt
LazyLoad: yes
VignetteBuilder: knitr
License: GPL (>= 2)
RoxygenNote: 7.2.3
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2026-06-09 07:14:59 UTC; root
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev make libharfbuzz-dev libicu-dev libpng-dev
        libuv1-dev libxml2-dev
Repository: https://jlaake.r-universe.dev
Date/Publication: 2023-10-19 18:32:54 UTC
RemoteUrl: https://github.com/cran/marked
RemoteRef: HEAD
RemoteSha: 637107c314bb0112a295c94af1683b6f3bb0f948